RNAJunction Database - Junction Profile:13073
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 13073: 2D19_k2_A-G4_B-A5

Primary Citation: (from PDB entry 2D19)

S.BABA K.TAKAHASHI S.NOGUCHI H.TAKAKU Y.KOYANAGI N.YAMAMOTO G.KAWAI SOLUTION RNA STRUCTURES OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP AND EXTENDED-DUPLEX DIMERS J.BIOCHEM.(TOKYO) V. 138 583 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Kissing-loopCluster:2D19 k2 A-G4 B-A5 
NC-IUBMB Classification:N/ACluster Page
Angles: 168°
Fit Criteria: A
Extracted Structure:Download

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CUGAAGUGCACACGG 15nt

Strand 2: Chain B: UGAAGUGCACACG 13nt

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