#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 73:89:96:102:162:172
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 27
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 27
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 26
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 26
S1_SQ2 = CG
S1_SQLEN2 = 2
S1_SQ = GCGC
S1_SQLEN = 4
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = UUAG
S2_SQLEN2 = 4
S2_SQ = UUUAGC
S2_SQLEN = 6
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  43
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  43
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  44
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  44
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = AGGUCC
S3_SQLEN2 = 6
S3_SQ = GAGGUCCU
S3_SQLEN = 8
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = AGAA
S4_SQLEN = 4
S4_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 12.947246911992075
H1_P_Y = -0.5466762916596748
H1_P_Z = 9.232034212088701
# Orientation:
H1_DX_X = -0.7908288461387514
H1_DX_Y = 0.5992285892215975
H1_DX_Z = -0.12455855640760305
H1_DY_X = 0.6120373558308678
H1_DY_Y = 0.7742431308818519
H1_DY_Z = -0.16111439833182928
H1_DZ_X = -1.0574692452358647E-4
H1_DZ_Y = -0.20364840323892008
H1_DZ_Z = -0.9790440831115959
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 44
H2_OUTID2_ORIG = 26
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 16.97082510622115
H2_P_Y = 4.420625093572348
H2_P_Z = 22.41990645100935
# Orientation:
H2_DX_X = -0.995516645740647
H2_DX_Y = -0.045301482953118644
H2_DX_Z = -0.0830324255669943
H2_DY_X = -0.0013721292579020883
H2_DY_Y = -0.8708373223898107
H2_DY_Z = 0.4915694001809321
H2_DZ_X = -0.09457655795486275
H2_DZ_Y = 0.4894794516373393
H2_DZ_Z = 0.8668708906810849
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 11.38520810307211
H3_P_Y = -10.221196297361761
H3_P_Z = -9.264408223785349
# Orientation:
H3_DX_X = -0.7289505583804861
H3_DX_Y = -0.18714830103894542
H3_DX_Z = 0.6584881144371639
H3_DY_X = -0.43312347158828857
H3_DY_Y = -0.6188132711894134
H3_DY_Z = -0.6553428062923778
H3_DZ_X = 0.5301274769299216
H3_DZ_Y = -0.762919162702115
H3_DZ_Z = 0.37002595771894065
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 4.36618325921064
H4_P_Y = -1.2753474278874055
H4_P_Z = -14.051477628230778
# Orientation:
H4_DX_X = -0.6600801275928232
H4_DX_Y = -0.1200054351938753
H4_DX_Z = 0.7415476523332618
H4_DY_X = 0.44456556058573327
H4_DY_Y = 0.7333181862636414
H4_DY_Z = 0.5143985809040466
H4_DZ_X = -0.6055210050015907
H4_DZ_Y = 0.6692108286772807
H4_DZ_Z = -0.4306984783847412
#############  END of Description of junction: j1